PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G195100.1
Common NameB456_004G195100, LOC105792034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 275aa    MW: 30095 Da    PI: 8.8959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G195100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19139189255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Gorai.004G195100.1 139 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDKAAYRMRG 189
                         69*******.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.29E-30139197No hitNo description
SuperFamilySSF541715.43E-23139199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-32139197IPR001471AP2/ERF domain
SMARTSM003801.8E-39139203IPR001471AP2/ERF domain
PROSITE profilePS5103224.236139197IPR001471AP2/ERF domain
PfamPF008471.6E-13139189IPR001471AP2/ERF domain
PRINTSPR003675.5E-11140151IPR001471AP2/ERF domain
PRINTSPR003675.5E-11163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEMYPSSNDS DLAVLDSIRR HLLGDSSDFR LDATIDCTTT TTTALPMVCR TSSFNRLYPC  60
LTETWGALPL KENDSEDMLV FGFLRDALTV GWAPSDNSSM NLPPIKPEPQ EILFEGPVRK  120
VDRAVNTVVP AAVPAKAGHY RGVRQRPWGK FAAEIRDPAK NGARVWLGTF ETAEDAALAY  180
DKAAYRMRGS RALLNFPLRV NSGEPDPVRV TSKRASPEPS NSSSFGAENG SPKRRRKVAP  240
SAPVVAQAGL DTGSRADIKY EVRSCRHDNQ RLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-41135204170ATERF1
3gcc_A1e-41135204170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231237PKRRRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475849.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803372e-85EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0D2S2P20.0A0A0D2S2P2_G
STRINGGLYMA11G03910.21e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.16e-71ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]